Penis pain: Causes and when to see a doctor - Base of penis throbbing
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Possible Causes of Penis Pain and How to Treat It. Penile pain can affect the base, shaft, or head of the penis. An itching, burning, or throbbing sensation may accompany the pain. Penis pain that's only felt in the middle of the shaft, especially chronic Penile pain is an itching, burning, or throbbing sensation in the base.